PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA22840
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family C2H2
Protein Properties Length: 301aa    MW: 33609 Da    PI: 5.7884
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA22840genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.10.000685107123
                                EEETTTTEEESSHHHHHHHHHHT CS
                    zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                                ++C  C+ +F+++  L  H++ H
  Tp57577_TGAC_v2_mRNA22840  85 FRCRFCHITFTTSQALGGHQNAH 107
                                89******************988 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576675.15E-579124No hitNo description
PROSITE profilePS5015710.59685112IPR007087Zinc finger, C2H2
PROSITE patternPS00028087107IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 301 aa     Download sequence    Send to blast
MSERIFLGND EDRNLPNKME EEPKLILEKE LGAVPPTTES NSGDLPTSKS LEIGEHSSSS  60
QNVTGEPSSQ NATSEPLPQR EVGEFRCRFC HITFTTSQAL GGHQNAHKQE RSLEKMEEQR  120
RENEINAILR FRSNNRPYHY SFSNPIRFQG NSYMHNANFH HPISPPMNNT WAIGSPSGGY  180
RGLYMPNTPD TSPRFVMQMS NSSLTTQQFG MTNFWGANQN VELPIHLRSN TLGLGLLPQE  240
NQAPSNAEGD ERNFNSHNEI QTLQLLPRGP IREGTIQPNS NVSSSSTQST SEEVNLNLTL  300
*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004493356.13e-78PREDICTED: zinc finger protein 3-like
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1671128
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G01860.14e-12C2H2 family protein